1859: On the Origin of Species

In 1859 Charles Darwin published his landmark book On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life.  This books marks the beginning over modern evolutionary biology.  Darwin used the phrase “decent with modification” to describe the process of evolution. 

The Evolution of the Idea of Evolution

Prior to Darwin the subject of evolution was subject to much speculation, uncertainty and debate.  The idea that living organisms change over time was controversial for a variety of reasons.  The idea is not self-evident because of the immensely long timescales required to make evolution happen.  More controversial was its direct contradiction with the teachings of Christianity, where the Bible claims that God created species in their current from.  However, by the 18th century some evidence began turning up in support of the idea that organisms have changed over time.  

The Swedish botanist Carl Linnaeus developed a system for naming and classifying living organisms.  His work provided some illuminating insights and a more comprehensive understanding into the relationships between different species. 

The Evolutionary Tree of Life
The Evolutionary Tree of Life
(Credit: Leonard Eisenbreg)

In the early 19th century, the French naturalist Jean-Baptiste Lamarck proposed an early version of a theory of evolution. During this time the topic of evolution was of interest and debate among some naturalists. His theory centered on two main principles: on the law of use and disuse, and the inheritance of acquired characteristics. Lamarck’s theory, although not considered to be a valid mechanism for evolutionary change, was influential in shaping early evolutionary thought. His ideas sparked further interest, discussion and debate on the topic.

The Development of Darwin’s Idea

Charles Darwin developed his theory of evolution by natural selection over the course of many years through careful observation, research and study. Darwin had his first insight into evolution on his famous Voyage on the HSM Beatle from the years 1831-1836.  During this voyage he collected a huge number of specimens made many important observations, especially in South America and the Galapagos Islands.

This map traces the route of Charles Darwin's voyage on the HMS Beagle from 1831-1836.
This map traces the route of Charles Darwin’s voyage on the HMS Beagle from 1831-1836.

The Galapagos Islands provided the location from some of Darwin’s most crucial observations.  While traveling to the different islands he noticed slight variations among similar species from one island to another.  For example the shapes of the beaks of finches differed depending on their diet and environment.  After returning home from his voyage, Darwin continued to reflect and do research while further developing his theory.  

Darwin was also heavily influenced by Thomas Malthus, an British economist who wrote about population growth.  Malthus proposed the populations tend to grow exponentially, while food production grows at a much slower rate, leading to competition and a struggle for survival.  Darwin expanded on this idea, leading to his concept of natural selection.  He spent over two decades refining his ides before finally publishing his theory in “On the Origin of Species” in 1859.

The Origin of Species: Darwin’s Theory of Evolution by Natural Selection

On the Origin of Species
The Origin of Species by Means of Natural Selection

Darwin’s book begins with the topic variation under domestication, or what some call artificial selection.  While the natural environment or habitat of a species selects which traits most help an organism survive and reproduce humans have the ability to select for specific traits in domesticated plants and animals.  Gradual changes, such as selecting for speed in an English racehorse, accumulate over time and produce noticeable differences from the older ancestors.  Darwin makes clear early on that heredity is key in explaining variation.

The book then progresses into a discussion on natural selection.  He talks on the idea the struggle for existence and the limits to population increase as forces pressuring species.  He credits Thomas Malthus for his contributions to this idea.  He explains his main principle of evolution by natural selection which can be summed up as the cumulative adaptation to environmental pressures.  Very gradually, over long stretches of time, species become more and more adapted to the environment in which they live.

Darwin provides a preponderance of evidence for his theory.  He uses Charles Lyell’s work on geology to show similarities between uniformitarianism and biological evolution.  He links classification schemes to his idea of decent with modification.  He talks about “rudimentary organs” or vestiges, organs left over which no longer have any function.  He shows how the geographical distribution of plants and animals falls into a pattern that supports his theory.  It is because of his careful collection of evidence that his work became so popular and his idea’s so quickly accepted. To this day, Darwin’s Theory of Evolution is considered the cornerstone of biology and essential to understanding the diversity of life on this planet.

Continue reading more about the exciting history of science!

Charles Darwin

Charles Darwin portrait
Charles Darwin

Charles Darwin (1809 – 1882) was an English naturalist and biologist who changed the way we think about life on this planet.  In 1859 he published his famous book On the Origins of Species, making the beginning of evolutionary biology and cementing his legacy as the most influential biologist in history.

Charles Darwin was born in Shrewsbury, England, the fifth of six children to his father Robert Darwin and mother Susan Wedgwood.  He attended the University of Edinburgh Medical School but quickly neglected his studies and his father sent him to Christ College, Cambridge with the intentions to have him join the clergy.  While at those university’s Darwin learned much in the intellectual environment, but little on the topics he was sent to study for.  However he was exposed to many free thinkers and a variety of ideas in science, particularly biology and geology.

Darwin was able to put these ideas into practice when he traveled the globe from 1831 – 1836 on the HMS Beagle.  It was during and after this trip that he was able to gather a substantial amount of evidence and privately begin to formulate his ideas on evolution by natural selection.  Upon Darwin’s return from the trip he was immediately received as a celebrity scientists in British circles and had cemented his career as a scientist.

Over the next twenty years Darwin continued to amass evidence to the original framework that he developed on his Beagle voyage.  He was even reluctant to publish his work, in fear of retaliation from the Catholic Church.  However he read a letter by Alfred Russell Wallace describing natural selection in similar terms to his and this motivated Darwin to get to work in publishing his work.  On July 1, 1858 both Darwin and Wallace presented a joint presentation to the Linnean Society presenting their work on natural selection.  It received little attention due to a lack of evidence.

For the next fourteen months Darwin continued to work on his book, and on November 24, 1859 On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life was published and immediately sold out of its 1,250 copies.  This book was the culmination of Darwin’s accumulation of evidence over the decades.

By the time of Darwin’s death in 1882 most scientists had accepted evolution as a fact. That is a powerful testament to how convincing his arguments and evidence was and is why he is regarded as one of the most influential scientists of all time.

Evolution Unshrouded Part 5: Why Evolution Matters


“Nothing in biology makes sense except in the light of evolution” – Theodosius Dobzhansky, 1973.

Biology, the science of life, has an enormity of subfields – marine biology, biochemistry, botany, genetics, microbiology, ecology, which interact with many other fields – medicine, agriculture, economics, environmental science, climate that influence our everyday lives.  Understanding evolution is therefore critical in making informed decisions about various topics, problems, and issues.  Let’s take a look at some of the more important topics of the day to better understand why evolution matters to everyday people.

Why Evolution Matters

why evolution matters - Studying non-human primates can lead to medical advances for humans
Studying non-human primates can lead to medical advances for humans

Medicine – Since bacteria and virus have such short generation times, they evolve very quickly.  Understanding this salient fact yields some useful knowledge such as:

  • Flu vaccinations should be taken yearly as viral strands rapidly evolve
  • Antibiotics shouldn’t be overused (or taken for viruses for that matter) as it will encourage the evolution of resistant strands
  • If antibiotics are proving unhelpful in fighting a bacterial infection you may be up against a resistant strand.  Taking a stronger dose will only increase the selection pressure.  Instead, take a combination of different antibiotics.
  • Understanding genetics allows people to manage hereditary diseases

Agriculture – Billions of dollars are lost every year as a result of ignoring evolutionary theory.

  • Monoculture can lead to a lack of genetic variation, making them vulnerable to disaster due to changing environmental conditions
  • Using a preventive spraying of pesticides leads to pests evolving resistances to those pesticides and rendering them less useful in the future.  Pesticides should only be used as necessary.

Economics – Misunderstanding evolutionary theory results in economic losses in many industries.  A new field called Evolutionary Economics is growing up around the idea of combining evolutionary theory with economics.

Environmental Science – We are rapidly learning about the ecosystem services that maintaining a healthy environment provides humanity

  • Hunting and farming for the largest animals, or animal traits, puts a strong selection pressure on being smaller.  As elephant poachers hunted for elephants with the largest tusks, those with smaller tusks had a reproductive advantage resulting in small tusks spreading through the population.  Fishing for the biggest fishes results in selection pressures for smaller fishes.  Hunting and farming should strive for proportional size yields.
  • Understanding the evolutionary history of organisms can help preserve biodiversity that allows ecosystem services such as: clean drinking water, decomposition of waste, nutrient dispersal and recycling, providing energy, food, and raw materials, and so on

Climate – Climate provides a strong selection pressure on nearly all life on Earth

  • Plants sprout, flower, and grow earlier in the season if the climate is cooling and later in the season if the climate is warming.  This affects planting and harvesting of many crops.

This is not by any means a comprehensive list although it should be easy to see that understanding and applying evolutionary theory has a wide range of effects on humanity.

Further reading: Guns, Germs, and Steel by Jared Diamond; Collapse by Jared Diamond; The Revenge of Gaia by James Lovelock; One With Niniveh by Paul and Anne Ehrlich; Betrayal of Science and Reason by Paul and Anne Ehrlich

Evolution Unshrouded Part 4: The Evidence for Evolution


The evidence for evolution is abundant in size and vast in scope, consisting of lines of inquiry from multiple fields converging on this single great insight.  With that said, the rich evidence available in the fossil record would be sufficient to prove that the evolution of species has occurred.  Although the fossil evidence alone would fill many volumes, I will attempt to summarize and outline the main lines of evidence here.  As good as any place to begin, I suppose, is the fossil record.

Human Fossils
  • The fossil record – Sometimes when a plant or animal dies its hardened remains can be preserved or fossilized through a variety of physical and chemical processes. These hardened remains reveal the physical history of our ancestors and show clear linkages and intermediaries between past and present groups of species.  Intermediaries between all kinds of groups of animals have been found such as between fishes and amphibians, reptiles and mammals, dinosaurs and birds, terrestrial mammals and whales, human and chimpanzee, and so on.  Many intermediaries were predicted *before* the actual fossils were found, showing the predictive power of evolution.
  • Evidence from DNA – A process known as DNA sequencing, which determines the order of the nucleotides in a DNA molecule, can be used to compare the DNA of any two species. Modern evolutionary theory predicts that closely related species – those with a recent common ancestor such as humans and chimpanzee – should share a higher percentage of their DNA than more distantly related species – such as humans and frogs, or humans and pine trees – and guess what? They do.
Peppered Moth's
Peppered Moth’s
The Evolution of Corn
Evolution of Corn
  • Artificial selectionCharles Darwin began On the Origin of Species with a section on artificial selection, which is similar to natural selection except that it is humans rather than nature selecting for particular traits. Auroch’s, the ancestors of some of our domesticated cattle, have been modified by repeatedly selecting for qualities such as their ability to produce milk, aggressive behavior, and so on. Corn was breed for size and calorie content and barely resembles its ancestor strains. Artificial selection is evident in the domestication of other plants such as wheat, rice, and various fruits and vegetables, and animals such as dogs, cats, sheep, goats and racehorses.
  • Evolution observed in nature – Evolution is sometimes difficult to notice occurring in nature due to its slow, gradual process that requires a lengthy timespan of many generations.  This is why its easier to observe in the lab by using bacteria or fruit fly’s which have shorter time spans compared to many other plants and animals, such as humans, red wood trees, and foxes.  In any case, evolution has still been observed a few times nature.  The classic textbook example is that of the peppered moth changing its color due to selection pressures from pollution during the Industrial Revolution in England.  Other observations include: populations of flowers blooming earlier due to warming weather; insects evolving resistances to pesticides; and lactose tolerance (technically called lactase persistence), and the sickle-cell trait (a perfect example of natural selection given that the geographical distribution of the gene for hemoglobin S and the distribution of malaria in Africa virtually overlap).  This leads us to…
Geographic distribution of species
  • Geographic distribution of plants and animals – The observed snapshot of the characteristics of plants and animals fits what would be predicted by modern evolutionary theory.  Populations of closely related species should resemble those in close proximity to each other and gradually become less similar as you move further away.  While on his historic voyage aboard the HMS Beagle, Charles Darwin noticed that finches and tortoises on the Galapagos Islands resembled those on the South American mainland and concluded that “one species had been taken and modified for different ends.”  This phenomenon is observed all of the world and is explained by the geographic speciation of plants and animals.
  • Microevolution observed in the laboratory – Microevolution has been observed many times in the lab.  A famous example is from the lab of Richard Lenski, an evolutionary biologist working at Michigan State University, that has been running a long term E. Coli evolution experiment since 1988 with a duration of longer than 60,000 generations that has shown evolution in action.  The evolved resistance of DDT in fruit fly’s is another example.
  • Vestiges in species – A vestige in biology is a part or organ of an organism that has become reduced or functionless in the course of evolution. The examples in nature of abundant. Whales have no hind legs but have tiny bones in them which are remnants of the hind legs of their walking ancestors from the distant past. Birds such as ostriches do not fly but have stubs of wings from their flying ancestors. Numerous species who now live in the dark have lost their eyes but still contain eye sockets. All mammals, including humans and the other tailless primates, have a tail at one point in their development. Humans have a tail for a period of about four weeks in our embryological development and we possess a tailbone when born, despite not having a tail. Along with a vestigial tail humans have a long list of vestiges. We still possess the genetic machinery to make our hairs raise when we’re cold (to trap in more heat) or when we’re afraid (to appear larger) even though we have lost most of our hair. We call this goosebumps.

This list barely scratches the surface of the evidence for evolution but provides a good place to start.  The evidence for evolution is extremely vast and conclusively proves evolution as a fact.  Knowing that evolution is a fact, we can now look at why understanding evolution is important.

Further reading: The Greatest Show on Earth by Richard Dawkins; Climbing Mount Probable by Richard Dawkins; The Blind Watchmaker by Richard Dawkins; Human Natures by Paul Ehrlich

Evolution Unshrouded Part 3: The Process of Natural Selection


The Theory of Evolution by Natural Selection is the only known process able to accurately explain the diversity of life that accounts for all the observable evidence. Evolution by natural selection was discovered simultaneously by Charles Darwin and Alfred Russell Wallace in the middle of the 19th century and was jointly presented to the Linnean Society on July 1, 1858.  Charles Darwin historically receives a bulk of the credit for this revolutionary discovery, justifiably, as he published a comprehensive book, On the Origin of Species, one year later that contained abundant documentary evidence to support his conclusions.

Natural Selection at work
Natural Selection at work
(Credit: The Common Descent Podcast)

Despite the incredulity of some people, the process of natural selection is remarkably simple to understand. Variations among individuals exist within a population of species and as a result each individual interacts with their environment slightly differently. Some individuals will necessarily be suited slightly better or slightly worse in relation to others to survive and reproduce in their particular environment. Those suited slightly better will survive longer (at least long enough to reproduce) and reproduce more, passing those slightly better characteristics on to their offspring, who in turn will reproduce more. Those suited slightly worse will not survive as long (or not even long enough to reproduce) and reproduce less offspring. Eventually those characteristics favorable to survival and reproduction will come to predominate the population, and the species will have evolved. Characteristics could be the color of a bird, or they could be the size and shape of its beak, the design of its wing, the shape of its eye, or anything else that would aid in survival and reproduction.  This process of differential survival and reproductive success is called natural selection.

“The ideas behind natural selection were that there was such a thing as a hereditary material, that there were spontaneous changes in the hereditary material, that those changes were expressed in the external form and function of the organism, that organisms made many more copies of themselves than the environment could support, and therefore that some selection among various natural experiments was mad by the environment for reproductive success, that some organisms, by pure accident, were better suited to leaving offspring than others.” – Carl Sagan

Evolution by natural selection has been called “decent through modification” and it works like an algorithmic process. Algorithms are logical rules that if followed will yield a certain result.  If certain conditions are meant, by means of an underlying mindless process, the results are guaranteed.  Long division is a simple example of an algorithmic process, as are all computer programs.   Darwin’s algorithm goes as such:

  • 1)      Heredity: Characteristics of organisms are passed onto decedents, but with slight variations – no two organisms are exactly alike
  • 2)      Competition: There is competition and a struggle for life.
  • 3)      Selection: Those decedents with advantageous variations – any that help one survive and reproduce – will out-reproduce all others, and their characteristics will then become commonplace within the population
  • 4)      Repeat: These slightly modified decedents are organisms capable of having children, so repeat step 1

Naturally, some people still will read this and be inclined to reject the notion that evolution occurs in nature. Thankfully, there is an overflowing wealth of evidence available to support the theory.

Further reading: Climbing Mount Improbable by Richard Dawkins; The Blind Watchmaker by Richard Dawkins; Darwin’s Dangerous Idea by Daniel Dennett

Evolution Unshrouded Part 2: What Evolution Is


I cannot tell you how many times I have read or heard people say ridiculous things when talking about evolution like “So a monkey gave birth to a human” or “We evolved from apes” or “There is no evidence for evolution” or “It can’t prove how life started so it’s worthless” or one of the classic arguments from the ignoramus “Evolution is just a theory so it could be wrong”. Then I have to correct them by explaining that species don’t just give birth to new species because evolution happens slowly and gradually, and that we didn’t evolve from apes rather we shared a common ancestor with the apes, and that the evidence for evolution is overwhelming, and that Charles Darwin’s theory explains the origins of species, not the origin of life, and that evolution is just a theory in the same sense that the germ theory of disease and the theory of gravity are just theories.

Evolution is the cumulative adaptation to environmental pressures. Evolution is cumulative because it builds upon the current features and traits of the organism through successive additions. Adaptations are any traits that contribute to the probability of the organism surviving and multiplying. The environment is where the organism lives, and environmental pressures are any factors that affect an organism’s ability to survive and reproduce.

Evolution's Tree of Life
Evolution’s Tree of Life
(Credit Leonard Eisenberg)

A species living on flat plains could be adapted to avoiding predators and catching prey by being spindly and speedy. On wide open, flat land, speed would be a survival advantage. If some members of its species wander onto the nearby mountainside, maybe due to overpopulation on the plains or scarcity of food or introduction of a new predator on the plain environment or because they got lost in a storm – the reason itself doesn’t matter; a new trait other than speed might be selected for, like strength for climbing over hills and rocks. Over many successive generations the stronger and bulkier –but slower – members of the group will have more reproductive success, passing on their traits of strength and bulk to their offspring. The fast spindly members of the group will eventually fade from existence as their traits are not suited to this new mountain environment. Their spindly and speedy cousins on the nearby plain will still be selected for being spindly and speedy. If the two groups stay separated long enough, eventually the stronger and bulkier group will grow further and further apart from their spindly and speedy cousins and the two groups will have evolved into two separate species. But remember, they shared the same distant common ancestors. Something like this probably happened to donkeys and horses in their evolutionary history. 

That’s it. That’s what evolution is in a nutshell. A good way to visualize how it works is by imagining a branch on a tree splitting into two different twigs. The tips of the two twigs are the new species, but they connect back to the one branch on the tree. With that, it’s time to take a look at the process by which evolution works.

Further reading: Climbing Mount Improbable by Richard Dawkins; The Blind Watchmaker by Richard Dawkins

Evolution Unshrouded Part 1: Background on Evolutionary Thought


The Theory of Evolution by Natural Selection is the fundamental insight of biology, and one of the greatest scientific insights that has ever been revealed to humanity.  Unfortunately, it is one of the least understood even though it answers some of the biggest questions people have been wondering about all over the world since at least the beginning of civilization, and almost certainly earlier.  If I am to use world religions as a measuring stick then people all over the world and throughout all of civilized history have been asking the same basic questions.  Who are we?  Where did we come from?  And why are we here?  Countless creation myths have been conjured up to explain those questions.  Many still persist and are taken quite literally today, despite them easily being shown as demonstrably false for anyone serious, curious, and intellectually honest enough to find out the facts for themselves.  Many of the books I have listed in my library section do this and would be a good place to start.  Anyway, apparently then, since all groups of people from all over the world in all times have asked these questions, it is in our human nature to want to know the answer.  But people living 2000 years ago at a lower scientific level than us had no way of knowing the answers, so they made up answers that seemed to work well enough for them given the limited knowledge of the world they had at the time.  People living near the coast created lots of sea gods to help them answer those questions, people living in the deserts invented sun gods, and so on.  This is not to say that the answers the people made up were correct, but they did provide a satisfactory answer to those questions so people could stop wondering about them. But people did not stop wondering about them, at least not all people.

A Scientific Revolution Emerges From the Dark Ages

Great Chain of Being
Great Chain of Being

The Middle Ages in Western Europe was by and large a total Christian society, molded by the writings of one of Christianity’s most influential figures, St. Augustine of Hippo.  During end the Middle Ages in Europe however, the unquestionable, accepted dogma of the Catholic Church was starting to come into question in various forms.  Around the 14th century in Venice, Florence, and other cities in Italy, there began a revival in the arts – sculpting, painting, and architecture, and a spirit creative spirit began flowing in Western Europe that had not been around in over a millennium.  A century later, around 1450, the printing press was invented and introduced into Europe by Johannas Gutenberg.  Three years later, Constantinople, the capital city of the Byzantium – the Eastern Roman Empire, fell.  The significance of this event is that the Eastern Roman Empire was most Greek and Constantinople held in it its great Imperial Library, containing many of the ancient Greek (and Roman) texts which by this time had been forgotten about in Western Europe.  So the city was sacked, the library was pillaged, and many of these books found their way to the printing press and began to facilitate around Western Europe, further kindling the intellectual spirit.   Then in the early 16th century the Protestant Reformation hit Europe like a bombshell, questioning the absolute authority of the Bible, and ultimately proving to be a triumph of literacy and the power and influence of the printing press.  At about the same time Nicolaus Copernicus published his book, On the Revolutions of the Celestial Spheres, challenging the Church’s geocentric cosmology and instead proposed that the Sun was at the center of the solar system.  This was confirmed within the century by Galileo Galilei and proved by the invention of the telescope.

The Great Chain of Being, a central dogma of the medieval church that has since quietly vanished from the public discourse, was being torn down and demolished by the scientific revolution.  One obvious question to the educated aristocracy of the time was if the church’s cosmology was all wrong, then maybe their dogma on the origins of species was all wrong too.  Evolution was not a novel idea before the time of Charles Darwin and Alfred Russell Wallace independently came to their same conclusion of natural selection as the mechanism for evolution.  The most famous promoter of the idea of evolution was by the French naturalist, Jean-Baptiste Lamarck, commonly known as Lamarck, who at the end of the 18th century proposed that species do change through the inheritance of acquired characteristics.  In simple terms, inheritance of acquired characteristics would mean that if a lumberjack built up large arms cutting down trees over the course of his life, then he would pass those acquired characteristics on to his offspring.  Obviously Lamarck’s hypothesis was rigorously challenged.  For example, it is quite obviously that if I get a scar on my wrist during the course of my life, that scar isn’t passed down to my offspring.  However at this time it was becoming increasingly apparent that species do change over time, or evolve.  Fossils were beginning to turn up in rocks and it was clear that species could go extinct.  The question no one could answer was, what was the mechanism for evolution?  This is what Darwin and Wallace achieved.  They explained the process by which species evolved, and by understanding that process we can understand who we are and where we came from.  But first, we need to understand what evolution is.

Further reading: Theory of Evolution: A History of Controversy (12 lectures) by Professor Edward Larson